Welcome to the haddock-runner docs

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The haddock-runner is an effort to reduce code duplication and to streamline the execution of HADDOCK benchmarks.

It is a standalone program, freely available at https://github.com/haddocking/haddock-runner.

It is designed to be used with both HADDOCK2.4/5, and HADDOCK3 versions.

When running a benchmark, users/developers may be interested in the following (in no specific order):

  • The quality of the docking results when using different parameters
  • Comparing the results of different versions
  • The time it takes to run HADDOCK on a set of targets

Have a look at the menu on the left for more information on how to use it.

Getting help

If you encounter any issues or have any questions, please open an issue on the GitHub repository, contact us at bonvinlab.support@uu.nl or join the BioExcel forum and post your question there.