haddock.clis.re.clustfcc module

haddock3-re clustfcc subcommand.

haddock.clis.re.clustfcc.add_clustfcc_arguments(clustfcc_subcommand)

Add arguments to the clustfcc subcommand.

haddock.clis.re.clustfcc.reclustfcc(clustfcc_dir: str, clust_cutoff: bool | float | None = None, strictness: bool | float | None = None, min_population: bool | int | None = None, plot_matrix: bool = True) → Path

Recluster the models in the clustfcc directory.

Parameters:

• clustfcc_dir (str) – Path to the clustfcc directory.

• clust_cutoff (Union[bool, float]) – Fraction of common contacts to not be considered a singleton model.

• strictness (Union[bool, float]) –

  Fraction of common contacts to be considered to be part of the same

  cluster.

• min_population (Union[bool, int]) – Minimum cluster population.

• plot_matrix (bool) – Should the corresponding matrix plot be generated.

Returns:

outdir (Path) – Path to the interactive directory.