Surface Accessibility Scoring module

Submodules

haddock.modules.scoring.sasascore.sasascore module

Module contents

Default Parameters

Easy

cutoff

default: 0.4
type: float
title: relative side chain surface accessibility cutoff
min: 0.0
max: 1.0
short description: relative side chain surface accessibility cutoff
long description: relative side chain surface accessibility cutoff. Residues with a relative side chain surface accessibility below this value are considered buried.
group: scoring
explevel: easy

resdic_accessible 

default: []
type: list
title: List of residues supposed to be accessible
short description: List of residues supposed to be accessible
long description: resdic_* is an expandable parameter. You can provide resdic_accessible_A, resdic_accessible_B, resdic_accessible_C, etc, where the last capital letter is the chain identifier.
group: analysis
explevel: easy

resdic_buried 

default: []
type: list
title: List of residues supposed to be buried
short description: List of residues supposed to be buried
long description: resdic_buried_* is an expandable parameter. You can provide resdic_buried_A, resdic_buried_B, resdic_buried_C, etc, where the last capital letter is the chain identifier.
group: analysis
explevel: easy

Expert

probe_radius

default: 1.4
type: float
title: Probe radius
min: 0.0
max: 10.0
short description: Probe radius
long description: Sets the probe radius (in Angstrom) used to compute solvent accessible surface area.
group: analysis
explevel: expert