Glycans docking
Back to main best practice page
Best practice guide
HADDOCK2.4 now supports docking of carbohydrates, however it has not been tested properly yet. It is in an experimental intense-development phase. A list of glycan residues supported by HADDOCK can be found here. This page consists of following chapters:
Tutorials
Publications
Optimal settings for docking of glycans
| Parameter | run.cns name | default value | optimal value |
|---|---|---|---|
| Clustering method | clust_meth |
FCC | RMSD |
| Cutoff for clustering | clust_cutoff |
0.6 | 2.5 |
More about optimal settings for different docking scenarios can be found here.
FAQ
Any more questions about glycan docking with HADDOCK? Have a look at our HADDOCK bioexcel forum hosted by 
. There is a very high chance that your problem has already been addressed.