HADDOCK2.4 manual

• HADDOCK home page
• Introduction

Input files and restraints

• Preparing PDB files for docking
• Coarse graining PDB files for docking
• Defining ambiguous interaction restraints
• Using residual dipolar coupling restraints
• Using pseudo contact shift restraints
• Using diffusion anisotropy restraints
• Using cryo-EM restraints
• Using a radius of gyration restraint

Project setup and parameters

• Docking protocol
• Setting up the docking
• HADDOCK parameters and settings (run.cns)
• FAQ

HADDOCK scoring

• Scoring

Analysis and scoring

• Analysis

Download and Software links

• Obtaining HADDOCK
• Installing HADDOCK
• Software links

Tips & tricks

• HADDOCK best practice guide - A must read when starting to use our software!
• Advanced model refinement
• Settings for use with bioinformatics predictions

HADDOCK-related publications

Online lectures

Tutorials