List residues in the interface

This command is a helpful when you want to know which residues are in the interface of a protein-protein complex. It calculates the distance between the residues of two chains and if the distance is less than a given cutoff, the residues are considered to be in the interface.

The result of this might be useful to generate restraints using the tbl command - to define active and/or passive residues.

Usage

To run the interface subcommand, you just need to provide the path to the PDB file and the cutoff distance. For example:

haddock-restraints interface path/to/complex.pdb 5.0