Python Module Index

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	h
	`haddock`
	`haddock.clis`
	`haddock.clis.cli`
	`haddock.clis.cli_analyse`
	`haddock.clis.cli_cfg`
	`haddock.clis.cli_clean`
	`haddock.clis.cli_cp`
	`haddock.clis.cli_dmn`
	`haddock.clis.cli_mpi`
	`haddock.clis.cli_pp`
	`haddock.clis.cli_re`
	`haddock.clis.cli_restraints`
	`haddock.clis.cli_score`
	`haddock.clis.cli_traceback`
	`haddock.clis.cli_unpack`
	`haddock.clis.re`
	`haddock.clis.re.clustfcc`
	`haddock.clis.re.clustrmsd`
	`haddock.clis.re.score`
	`haddock.clis.restraints`
	`haddock.clis.restraints.active_passive_to_ambig`
	`haddock.clis.restraints.calc_accessibility`
	`haddock.clis.restraints.passive_from_active`
	`haddock.clis.restraints.restrain_bodies`
	`haddock.clis.restraints.validate_tbl`
	`haddock.clis.restraints.z_surface_restraints`
	`haddock.core`
	`haddock.core.cns_paths`
	`haddock.core.defaults`
	`haddock.core.exceptions`
	`haddock.core.supported_molecules`
	`haddock.core.typing`
	`haddock.fcc`
	`haddock.fcc.calc_fcc_matrix`
	`haddock.fcc.cluster_fcc`
	`haddock.gear`
	`haddock.gear.clean_steps`
	`haddock.gear.config`
	`haddock.gear.expandable_parameters`
	`haddock.gear.extend_run`
	`haddock.gear.greetings`
	`haddock.gear.haddockmodel`
	`haddock.gear.known_cns_errors`
	`haddock.gear.parameters`
	`haddock.gear.prepare_run`
	`haddock.gear.preprocessing`
	`haddock.gear.restart_run`
	`haddock.gear.validations`
	`haddock.gear.yaml2cfg`
	`haddock.gear.zerofill`
	`haddock.libs`
	`haddock.libs.assets`
	`haddock.libs.libalign`
	`haddock.libs.libcli`
	`haddock.libs.libclust`
	`haddock.libs.libcns`
	`haddock.libs.libfcc`
	`haddock.libs.libfunc`
	`haddock.libs.libhpc`
	`haddock.libs.libinteractive`
	`haddock.libs.libio`
	`haddock.libs.liblog`
	`haddock.libs.libmath`
	`haddock.libs.libmpi`
	`haddock.libs.libontology`
	`haddock.libs.libparallel`
	`haddock.libs.libpdb`
	`haddock.libs.libplots`
	`haddock.libs.librestraints`
	`haddock.libs.libstructure`
	`haddock.libs.libsubprocess`
	`haddock.libs.libtimer`
	`haddock.libs.libutil`
	`haddock.libs.libworkflow`
	`haddock.modules`
	`haddock.modules.analysis`
	`haddock.modules.analysis.alascan`
	`haddock.modules.analysis.alascan.scan`
	`haddock.modules.analysis.caprieval`
	`haddock.modules.analysis.caprieval.capri`
	`haddock.modules.analysis.clustfcc`
	`haddock.modules.analysis.clustfcc.clustfcc`
	`haddock.modules.analysis.clustrmsd`
	`haddock.modules.analysis.clustrmsd.clustrmsd`
	`haddock.modules.analysis.contactmap`
	`haddock.modules.analysis.contactmap.contmap`
	`haddock.modules.analysis.ilrmsdmatrix`
	`haddock.modules.analysis.ilrmsdmatrix.ilrmsd`
	`haddock.modules.analysis.rmsdmatrix`
	`haddock.modules.analysis.rmsdmatrix.rmsd`
	`haddock.modules.analysis.seletop`
	`haddock.modules.analysis.seletopclusts`
	`haddock.modules.analysis.seletopclusts.seletopclusts`
	`haddock.modules.base_cns_module`
	`haddock.modules.extras`
	`haddock.modules.extras.exit`
	`haddock.modules.refinement`
	`haddock.modules.refinement.emref`
	`haddock.modules.refinement.flexref`
	`haddock.modules.refinement.mdref`
	`haddock.modules.refinement.openmm`
	`haddock.modules.sampling`
	`haddock.modules.sampling.gdock`
	`haddock.modules.sampling.lightdock`
	`haddock.modules.sampling.rigidbody`
	`haddock.modules.scoring`
	`haddock.modules.scoring.emscoring`
	`haddock.modules.scoring.mdscoring`
	`haddock.modules.scoring.sasascore`
	`haddock.modules.scoring.sasascore.sasascore`
	`haddock.modules.topology`
	`haddock.modules.topology.topoaa`
	`haddock.modules.topology.topocg`